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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACGTCTATTTCTTGAAAAAACCGGAAACACATGGGAATCTTGGGAACAAAAAACGAATTTCCAGAAACAACCTGGAAAATTTCTCCCGTTGGACATTgtaagcatccatatgactatatctttgtctcttaagattctcttatgtatcgttcaataaactcttttgtatcgtttgttttag

Basic information

species Arabidopsis thaliana
transcript AT2G31320.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31320.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 5'ss of exon 11
CAAACGTCTATTTCTTGAAAAAACCGGAAACACATGGGAATCTTGGGAACAAAAAACGAATTTCCAGAAACAACCTGGAAAATTTCTCCCGTTGGACATTgtaagcatccatatgactatatctttgtctcttaagattctctt---------atgtatcgttcaa---taaactcttttgtatcgtttgttttag
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TAGAAGATTGTTTCTTGAGAAGACTGGAAACCCCTGGGAAGCATGGGAACAAAAAACAAATTTCCAAAAGCAGCCTGGGAAATTTTATCCACTTGACATTgtatgt---tgtgggataatgtttttacctgctggatttttttcccctttttagtggatcatgtggattcaatctgatgtgtttaatatattgcag