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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagttagttgttgaggttattagatgttggtagttgtagaggttcttag...

Basic information

species Arabidopsis thaliana
transcript AT2G31060.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 10
GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagttagttgttgaggttattagatgttggtagttgtagaggttcttag---
| |||||||||||||||||| | || ||||| |||||||| ||||| ||||| || ||||| |||| ||   ||    |      | | || |  || | |  |   ||   |   | ||     |  || |  |||| |     |  ||    |   | ||||   
GAATCTTGATTGAGAATATGCGCCGCGAAGGATTTGAGCTTTCAGTTTCACCCCCAAAAGTGATgtgagcaccaatattccac--atattatactctttgtatgct-tacgttttcacttcagcctgaagttctttagttcaattttctttccaacagtattagaga

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 10
GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagtt-agttgttgaggttattagatgttggtagttgtagaggttcttag-
|||| || |||||||||||||| || ||||| |||||| | || ||||| ||||||||||| |||| |||           |  ||        | ||| || | |  || ||||   || |     ||  | | ||   ||       || | |    | |||  
GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATgtgagttttcaaggacagaataaggctttgaatat-tttgccacattatcattttttacacaatgtagct-ttgcttgcctagcattattggttattttatg

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 10
GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagtt-agttgttgaggttattagatgttggtagttgtagaggttcttag-
|||| || |||||||||||||| || ||||| |||||| | || ||||||||||| ||||| |||| |||          ||   |     |  | ||| || |||  || |||||  || |     || |||| ||   ||      | |  | | |    | | 
GTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAATgtgagttttcaaggactgaacaaggctccaaatat-tttgtctcattatcagtttttacacaatgtggtt-ttgcttgcctagtgctacatatggatgtggc

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 10
GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagttagttgttgaggttattag-atgttggtagttgtagaggttcttag
||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||  | | |  ||| |   |  | |  |  | |      |    |      |||| |  || ||| | || | |||| |  |   ||  |     | 
GTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCATgtgagtatcgt-tgcttgctagaatgagaccccctttctcctttcctttttactctagtagcagatgttctaagtaggttgatgatcaaagcagaggaaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832144|gb|CK121828.1|CK121828
EST:     AATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCAT                         GTATAAAACTGAAAAGGGACAAAAGCTTGAACCAATTGAAGAGGTGACTAT
genomic: AATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcaca ... ttatgttcagGTATAAAACTGAAAAGGGACAAAAGCTTGAACCAATTGAAGAGGTGACTAT
EST: gi|164109683|gb|ES039873.1|ES039873
EST:     CCTAAAGTCAT                         GTATAAAACTGAAAAGGGACAAAAGCTTGAACCAATTGAAGAGGTGACTAT
genomic: CCTAAAGTCATgttagtcaca ... ttatgttcagGTATAAAACTGAAAAGGGACAAAAGCTTGAACCAATTGAAGAGGTGACTAT