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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaatacagtatttatctcaaagagagacattggttctattcaagaatttgaattcgcttctgcatttttttttatatatttcttctcttttgacag

Basic information

species Arabidopsis thaliana
transcript AT2G25050.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25050.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g55150.2 (Oryza sativa), 5'ss of exon 5
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaatacagtatttatctcaaagagagacattggttctattcaagaatttgaattcgcttctgcatttttttttatatatttcttctcttttgacag
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GTTAGGAACTCTGTTAAGCTTAAGCGAGTGATGCAAACAATTCTTTCGTTGGGAAATGCATTAAACCAAGGAACTGCAAGGGgtgagtaattaagtatgttc-taagattgatatgtttacgatatgatttttgcaaattgatcttccaacatgaagaaatacagtgcacatg---gtttctcttt-----------------------

upper sequence: AT2G25050.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G33930.1 (Glycine max), 5'ss of exon 11
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaatacagtatttatctcaaagagagacattggttctattcaagaatttgaattcgcttctgcatttttttttatatatttcttctcttttgacag
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ATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGgtgagt-taaagctttagcattcaccatttcaccatcagaaatcatgtttgtg---gaca--aataatgtagaaaagtttataatcaaacttggacttctc---agata------------------

upper sequence: AT2G25050.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv04s0008g06530.t01 (Vitis vinifera), 5'ss of exon 14
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaatacagtatttatctcaaagagagacattggttctattcaagaatttgaattcgcttctgcatttttttttatatatttcttctcttttgacag
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ATCAGGAATTCGGTCAAATTGAAAAGAATCATGCAAACTATCCTTTCACTGGGAAATGCTTTAAACCATGGAACAGCAAGAGgtgagttga--------attgtcggatt----aatgtcctattcatgttaacatcataaattatatgaagacaaacatataaagt-gttactgtataaaataattgatccatc--------------