1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAGAGCTATTGGGAGATGATGAAGTCTGGAGTGGCTGATATGGTCAACACAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaaagtccctttagaggctatacatacatgtttttgacaaaaaattcgtcggtgaaagtaactaaaccatcctctattttctgtggtatggcag
species | Arabidopsis thaliana |
transcript | AT2G24200.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGEST: gi|47829652|gb|CK119336.1|CK119336
genomic: CGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGG
EST: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTGEST: gi|116409488|gb|EG452080.1|EG452080
genomic: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTG
EST: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGEST: gi|86087145|gb|DR382904.1|DR382904
genomic: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGG
EST: CAGGCGGGCGTGCAGGAGGATCCATCMCCGCGGCTYTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTGEST: gi|125121611|gb|EL168697.1|EL168697
genomic: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTG
EST: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGEST: gi|125161137|gb|EL188395.1|EL188395
genomic: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGG
EST: GGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTGEST: gi|301501096|gb|HO206636.1|HO206636
genomic: GGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTG
EST: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAG TTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTG
genomic: CAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaa ... ggtatggcagTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAGCTATTGGGAGATGATGAAGTCTGGAGTGGCTGATATGGTCAACACAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGgtgaaaacaaagtccctttagaggctatacatacatgtttttgacaaaaaattcgtcggtgaaagtaactaaaccatcctctattttctgtggtatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT