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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgcttacacttttgtcatcttctttgaagaatgagagatcttgaatgtgttttctttggctttag

Basic information

species Arabidopsis thaliana
transcript AT2G23700.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 9
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagta----gagaacgcttacacttt------------tgtcatcttctttgaagaatgagagatcttgaatgtgttttctttggc-tttag------
|||||||| | | ||||||| ||  | || |||  |  |||||| | | ||||||||  ||  ||||||||| |||||||| |||||||||||||||||||||  ||     |     || | || |             ||| || ||   | |    ||  || | |   || |   || ||      |||       
AAAATTCAAAGCTGGAGATGGACGACGAGCATACCCGATCGAGCGTCCTGAGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattctaactcttctcagacctcagggtgtttgcatgtgatttttcattagacttgtaagttgtaacatctccatttttcaatgcttaacatttt

upper sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 6
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgct--------tacacttttgtca-tcttctttgaagaatgagagatcttgaatgtgttttctttggctttag----------------
|||||||| | | ||||||  ||  ||||  ||| | || |||||  | |||||||| | | |||||||||| |||||||| ||||||||||| |||||||||       ||  ||        | || ||| || | || | |||| | |    ||     |||||   |  | ||||  ||| |                
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattcccttaattctcatgggtgtgcaatttcgttactcatttttgcaaagcttgattatatgaataattgatatttg--tttgggcaattccttatacat

upper sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 12
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgctta--------cacttttgtca-tcttctttgaagaatgagagatcttgaatgtgttttctttggctttag----------------
|||||||| | | ||||||  ||  ||||  ||| | || |||||  | || ||||| | | |||||||||| |||||||| ||||||||||| |||||||||       ||  || |        || ||| || | || | || | | |    ||     |||||   || | ||||  ||| |                
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAACCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctcaattctcattggcgagcaatttcgttactcattttcgcaaagcttgattatatgaataatttatatttg--tttgggcaattccttatacat

upper sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 10
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgcttacacttt---------tgtcatcttctttgaagaatgagagatcttgaatgtgttttctttg--gctttag------------
|||||||| | | ||||||| ||  |||| |||  |  | |||| | | ||||||||  || |||||||||| |||||||| ||||||||||| || ||||||  ||         | | || |         ||| || ||   | |    ||  || | |    | |   || ||    ||||||             
AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttttcattagacttgtaagttgtaacgtctccatttttcaatgctttaacattttttttgg