Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGTTTTCCGGGTTATGACGAGTATGTACCTATGGTGGACAAAGCCGTTGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagttagctgctatatgctttacgtaccagtaggctccggtttagaaccaaatactgaaggaaaagaatttaacctaatccttgtttacatagg...

Basic information

species Arabidopsis thaliana
transcript AT2G21520.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164227545|gb|EL986292.1|EL986292
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGC
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGC
EST: gi|125050938|gb|EL123207.1|EL123207
EST:     ACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
genomic: ACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
EST: gi|124988838|gb|EL061196.1|EL061196
EST:     GACGCCACCTGGAAGGTGTAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCAT
genomic: GACGCCACCTGGAAGGTG-AAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCAT
EST: gi|125323399|gb|EL337481.1|EL337481
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTTAATGTCTCCCACCG
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTT-AATGTCTCCCACCG
EST: gi|164039146|gb|ES150325.1|ES150325
EST:     GACGCCACCTGGAAGGTGAAACCCGCCACCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
genomic: GACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
EST: gi|124777233|gb|EH867176.1|EH867176
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAAGCTTTAATGTCTCCCACCGTTCCAAAAGATCA
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGA-GCTTTAATGTCTCCCACCGTTCCAAAAGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTAGTTTTCCGGGTTATGACGAGTATGTACCTATGGTGGACAAAGCCGTTGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagttagctgctatatgctttacgtaccagtaggctccggtttagaaccaaatactgaaggaaaagaatttaacctaatccttgtttacatagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG