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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGgtacaaataatcttagcatgatttctataatttttaaccttaaacccattaactgatcctcagttgtttgggtag

Basic information

species Arabidopsis thaliana
transcript AT2G19940.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19940.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G01220.1 (Glycine max), 5'ss of exon 10
TTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGgtacaaataatcttagca----tgat-ttctata------atttttaaccttaaacccattaactga-tcctcagttgtttgggtag----------
|||||||||||||||||||| |  |||||| | ||   ||||||||||| || |||||||| ||||| || || |||||||||  | ||       ||    | || ||||||       ||| ||  | |        | || | | |   ||  || ||   |            
TTCCTGAAATTGAACAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATGgtaagagtagcaccgacagttctaatgttctatcttctgtattcttttcttcttgtttgtcaagtaaattaacaaatgcttctttgccatttataag

upper sequence: AT2G19940.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 11
TTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGgtacaaataat-cttagcatgat----ttctata------atttttaaccttaaacccattaactga-tcctcagttgtttgggtag---------
||||||||||||| |||||| |  |||||| | ||   ||||||||||| || |||||||| |||||||| || |||||||||  | ||   | |||  |  |    ||||||       ||| ||  | |    |   | || | | |   ||  || ||   |           
TTCCTGAAATTGAGCAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtagcacctagagttctaatgttctatcttctgtattcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125186073|gb|EL201027.1|EL201027
EST:     TTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAAT
genomic: TTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAAT