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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag

Basic information

species Arabidopsis thaliana
transcript AT2G14720.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagtt-ttcatcatcttaagatttctagatttctataa-atatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
||||||||||| ||||||||||| ||||| || |||||||||||||| ||| |||| || ||||| ||| | || || || ||||| ||||||||||| |||||||| || ||   ||| | |||  |  | ||  ||   || || ||      || |     |      |   ||| ||  |||                                                                            
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattc-tgcag---------------------------------------------------------------------------

upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataa-atatgcat-gtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
||||||||||| ||||||||||| ||||| || |||||||||||||| ||| |||| || ||||| ||| | || || || ||||| || |||||||| ||||||||     || ||| | ||   |  | ||  ||   || || || |   |  |   |      | ||  | |||  |  |||                                                                            
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGATACTTGCATAAgtgagttaaataca-cttgatatccttttacttgcatggcatttgaattgcttggtttcatttatttccaactgggtatcc-tgcag---------------------------------------------------------------------------

upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
||||||||||| ||||||||||| ||||| || |||||||||||||| |||  |||||| || || ||||| || ||||| ||||| || || ||||| ||||||||   |  ||   |   ||| ||  |     || || ||||| |    || ||| | |    |     ||  ||  |    | | | |  |    |  || |                                                     
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttg--aatatgcaagactttttacttgctcctacatttgcatat----gtttgttata---aaggcttgttttcatgtcctctactggatt----acctacag----------------------------------------------------

upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA01G45380.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
||||||||||| || |||||||| ||||| || |||||||||||||| |||  |||||| || || ||||| || ||||| ||||| || || ||||| ||||||||   |  ||   |   ||| ||  |     || || | ||| |    || ||| | |    |     ||  ||  ||   | | | |  |    |  || |                                                     
TGTCAGTGCCCTGACTGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttg--aatatgcaagactttttacttgctcctacattttcatat----gtttgttata----aggcttgttttcatgccctctactggatt----acctacag----------------------------------------------------

upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcc-tctgaatttagaaaa-gttctctctctcttta-tcaactgaaattggttcttttgtctggaatttag
||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||| |||| || ||||| ||| | || || || |||||||| || ||||| ||||||||            | |   | ||| ||||||||                 | ||| |||  |||| |   |   |   |  ||||  |  | || |   | | ||  | ||  | |||  |  |||  || |                         
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagtt------------aaacaaccagagttctataacc---------------tatcaaacaaaaaaacaac-cagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag------------------------

upper sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ30872 (Selaginella moellendorffii), 5'ss of exon 10
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttag
|| ||||||||||| ||||  || |||||||| |  || |||||||| |||||||| ||||| || ||||| |||||| |||| || || |||||||| ||| ||||        |||  ||        |||| | |    ||  | ||   || | |  | |     |                                                                                          
TGCCAGTGCCCGGATTGTACTTGCAAGAACACGTACGGTAGCTATGACTGCTCTTGCAGCGGTGATCTTCTTTACATGCGAGAACACGATACTTGCATAAgtaagttc-------cttgggac------gtttccacaggcttgattttattggtttctttcgctttccag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164001018|gb|ES170905.1|ES170905
EST:     CTCTTGTAGC-GGGACCTTCTCTACATGAGAGACCATGACACTTGCATCA                         GCAAGACGGGTTCACAAGTGAAA
genomic: CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttc ... tggaatttagGCAAGACGGGTTCACAAGTGAAA
EST: gi|125138195|gb|EL177700.1|EL177700
EST:     CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCA                         GCAAGACGGGTTCACAAGTGAAAT
genomic: CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttc ... tggaatttagGCAAGACGGGTTCACAAGTGAAAT