Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggatatagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag

Basic information

species Arabidopsis thaliana
transcript AT2G14255.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14255.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os11g34860.1 (Oryza sativa), 5'ss of exon 10
ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggata---tagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag
|||||| | ||  |||| || || || || || |||||||||| ||| ||||| ||||||||||||||||| || ||||| || || |||||||| | |||||||  |     || || |||   | | |  | ||||    |  |||   |       |   |||  |   | |  | | |  ||||   | |     || |                        
ATAATTCGCCCAATGCGCTCCAAACATTGTCCAACTTGTAAGCACTGTGTTGAGCAGTTTGACCATCACTGTCCTTGGATATCAAATTGTGTTGGAAGGgtaaga--cgggagcaatt-ttggaattccacctgaagttttcaatatagcttgtcttccattggaagaaagttctcttccgtgctgttgcagctg-tattacc------------------------

upper sequence: AT2G14255.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM5G838671_T01 (Zea mays), 5'ss of exon 1
-ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggatatagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag
 |||||| ||||  |||| || || || || || ||||||||||  || ||||| ||||| |||||||||||||| ||||| || ||||||||||| |||||| | |   | || | |||    ||    | ||    | |  | | |   ||                ||  | |    |||||||| |  ||   | ||| | ||  |               
GATAATTCGACCTATGCGCTCCAAACATTGTCCAACTTGTAAGCATTGTGTTGAGCAGTTCGACCATCACTGCCCATGGATATCAAACTGTGTTGGAAAGgtatgca---cattaatttgcacatccaaaattttctattgttatgcttgggtgcc---------tgttcttctgtttcaattgttttaggaaatattttctggctaggcac-------------

upper sequence: AT2G14255.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G06860.1 (Glycine max), 5'ss of exon 10
ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggatatagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag
||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||||| || ||||| || ||||||||||| |||||||| |  | ||   ||  ||    || ||   | |    |||   |  | |  |   ||| |   |  | || |     ||| |||  || ||  ||  | ||                    
ATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTTGACCACCACTGTCCATGGATATCTAACTGTGTTGGGAAGgtaaggag-tgttgtgctattttaattgttacccacaagatcaaaagtgcattcttctgatggatttcttttttttt----ttggttttatttacaatagatgga--------------------

upper sequence: AT2G14255.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G30380.1 (Glycine max), 5'ss of exon 10
ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggatatagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag
||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||||||| ||||| ||||| || ||||| || ||||||||||| |||||||| |  | ||   ||  ||    |||||   | |    |||   |  | |  |   ||| |   |  |  |||   | ||| |||  || ||  ||  | |                     
ATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTCGACCACCACTGTCCATGGATATCTAACTGTGTTGGGAAGgtaaggag-tgttgtgctgttttaattgctacacacaagatcaaaagtgcattcttctgatggatttcttttatat---ttttggttttatttacattagatgg---------------------

upper sequence: AT2G14255.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0088g01260.t01 (Vitis vinifera), 5'ss of exon 10
ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGgtaagaatctctttcacttgttgctctgctaattaaagtggcaaggatatagtaatgacatgaaacaccctgttatgcatattgttttggttaacggtatcttgatacacttactcatttcacag
||||||||||| || || || ||||||||||| || ||||||||||| || ||||| |||||||| |||||||| |||||||| || ||||| || ||||| ||||  |    |   | || || || |   |    ||   |||||| || | |     | |  |   ||||||| |  || | |  |   | |  ||                         
ATAATTAGACCTGTTCGCTCAAAGCACTGCCCTACATGTAAGCGCTGTGTGGAACAATTTGACCACCACTGCCCTTGGATTTCAAATTGTGTAGGGAAGgttagaaagttagacttctttttctttgttttctgggttgatgaggatacagcactccttagtagaaatgtgttatgaactttttatgagaccatgtgat-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124785145|gb|EH874824.1|EH874824
EST:     GAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTAGGTAAGG                         AAGAATAAACGCTACTTCTTAGTCTTTGTGATCATGGGAGCTTTAACATC
genomic: GAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTT-GGTAA-Ggtaagaatct ... catttcacagAAGAATAAACGCTACTTCTTAGTCTTTGTGATCATGGGAGCTTTAACATC