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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag

Basic information

species Arabidopsis thaliana
transcript AT2G14120.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct-----aagcatgtgggagcat----------ttt-----tttgcttatctgttctttccacatactt----attttgcttgagttt--tttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag----
||||| ||||| ||||||||| |||| | |||||| || || ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||||| |||||| | | ||  |  ||     ||| |   |    |||          |||     |||  |||  || | |||  | || |||    || ||   ||| |     ||    | | |  || |||       | |   |   | ||||    |  |  ||     
GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcag

upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag
||||| |||||||||||||| || || | |||||||||||| || || ||||| ||||| ||||| || | ||| ||| | ||||||||||| |||||| ||       | || |           |   |  |   || |  |||    |||||| |||||  | |   | | | | | || |   || |     |  | ||  | |  || | ||| |||| |   |||
GAGGTGGATCCATGTGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAAgtaggtctaatcgc-cctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctacc-aaatatgtaaattatttggccaactgaaaaaatacttat--ctattattttcatgttattag

upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag
||||| |||||||| ||||| || || | |||||||||||| || || ||||| ||||||||||| || | ||| ||| | |||||||| || |||||| |    |    | ||      |     ||  |  |   || |  ||     |||||| |||||  | |   |  || | | || |    | |  ||||  | ||  | |  || | ||| ||||   | |||
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccctcttat-----tacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaa-ctgaaaaatacttat--ctattattttcatgcacttag

upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct--------------aagcatgtgggagcattttt------ttgcttatctgttctttccacatactt------attttgcttgagttt---tttacttttacagcaactctgattagtatctct-tgctttcattctcatctgcatag
||||| ||||| ||||||||| | || | |||||| || || ||||| ||||| ||||| ||||| |||| ||| || || ||||||||||| |||||| | | || ||   |              |||     |  |  || |||      ||  |||  || | |||  | ||  ||      ||  |   ||| |     || || |  | |  ||  |     |  || | | | | || ||| |||| |    ||
GAGGTGGATCCGTGTGAAGACCTGACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCGTTGTTTGTTCCAGAAgtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgctatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgtttatccatttattttcatgtaatcag

upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggttta-------------tctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatactt--------attttgcttgagttttttactttt----acagcaactctgattagtatctcttgctttcattctcatctgcatag
||||| ||||||||||| || || || | |||||| ||||| |||||||| || |||||||| || || ||||||||||||||||| ||||| ||| || |              | | | | ||||||      |    | ||||    |||| | |    | || ||  ||        |||| || || | ||||   ||||    |   | |   | |    ||  |  ||||  |      || |    ||
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaagttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag

upper sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 10
-------GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag
       ||||||||||||||||| |  ||||| | ||| |||||||| ||||| || ||||||||||| || |||| |  ||   | ||||| || || |||   ||    |      ||  | ||  |  ||     |     | |    ||  ||   | |    |   |||    |   ||| ||     |  |                                        
GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaacagccgtagagctaagatcaattatttccttgggcaga--------------------------------------