1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCTTGCATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatctttccctcttacacgcctcgtggtacaaataacacgcctcgtcttttgaaattataaaagagtactactgtttgggtttcag
species | Arabidopsis thaliana |
transcript | AT2G05990.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGEST: gi|125103472|gb|EL157868.1|EL157868
genomic: -TATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAG
EST: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACAEST: gi|47829300|gb|CK118984.1|CK118984
genomic: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACA
EST: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGA
genomic: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTTGCATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatctttccctcttacacgcctcgtggtacaaataacacgcctcgtcttttgaaattataaaagagtactactgtttgggtttcag
- - - - - TGAAGC
- - - - - - AAGCTG
- - - - - - - GCTGGA
- - - - - - - - TGGAAG
- - - - - - - - - - AAGGAA