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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgtttgcctatagaacttaaattctacatagaggatggtggtatatgataaaatctcatcatgctctttcattgcctggatcacacaattcacag

Basic information

species Arabidopsis thaliana
transcript AT2G04350.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04350.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 10
AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgtttgcctatagaacttaaattctacatagaggatggtggtatatgataaaatct-catcatgctctttcattgcctggatcacacaattcacag--------------
 |||||||||  |||||| |||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| |||||  |||| |||||||||||    | |||     |  |||||  |    |||||  |   |   | || |||| ||  |   | ||  |  || |  ||||     ||||                 
CGATATTGGGCAATTCCATCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAGgtaaagcaataccttgttcattctggaatctggatgaagtgctgacacaagatctgcagtaacattttctagggcttacatcatgtt-ttcattatgacttgcttgcag

upper sequence: AT2G04350.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G07280.1 (Glycine max), 5'ss of exon 9
AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgt-----------ttgcctatagaacttaaattctacatagaggatg-----gtggtatatgataaaatctcatcatgctctttcattgcctggatcaca--caattcacag
 |||||||||  ||||||||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| |||||  | || || ||||||||           |  | | |     ||  | |||  ||| || |         | |  |   |||  | |  |    ||     | ||  |  || |      | |  |||
TGATATTGGGCAATTCCACCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATCTCTCTCGGAAAGgtaactcaaaccataccttgttcgttttggagtctggataaagtacttacaccagatccacagtaactttttctgggccttacgtagtgttttaattatgacttacttgcag

upper sequence: AT2G04350.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G07060.1 (Glycine max), 5'ss of exon 9
AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgtt-tgcctatagaacttaa-attctacatagaggatggtggtatatgataaaatctcatcatgctctttcattgcctggatcacacaattcacag------------------
 ||||| ||   |||||| |||||||||||||| ||| |||| ||||| ||||| |||||||| |||||||| ||||| ||||| || || || |||||||||   |  ||| | |||   ||| || |    | |||      |   | ||  |   |      | ||  ||| |||  ||     | ||||                     
GGATATCGGACAATTCCATCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAGGATATTGTCAAACTTCAGCATGGAGAATATGTCTCTCTCGGAAAGgttactcaaatataccttgtcattttagaatctgaatgaaatactgccacaagtttctagtgaatttttcaatt-cctacatagtg-atttcattttttttctcttaattgcag

upper sequence: AT2G04350.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ27012 (Selaginella moellendorffii), 5'ss of exon 9
AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgtttgc--ctataga-acttaaattctacatagaggatggtggtatatgataaaatctcatcatgctctttcattgcctggatcacacaattcacag
 || |||||    ||||| || ||||| || || ||| |  | ||  | ||||| || |||||||| ||||||||||| ||||||||||| || || ||||| ||   ||||  | |||| ||    ||| || | ||  |  | | | ||||| | |   ||                                  
TGACATTGGACAGTTCCATCCCGATGGTTGCCTGGAAATTGTAGACCGGAAGAAGGACATTGTTAAGCTTCAACATGGCGAATACGTATCGCTGGGCAAGgtatgatgctatctacacttgaacaagaca-agtgaattttttttttttataaacttttgacag---------------------------------

upper sequence: AT2G04350.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ26722 (Selaginella moellendorffii), 5'ss of exon 9
AGATATTGGGAGATTCCACCCTGATGGATGTCTCGAAGTCATCGATAGAAAGAAAGATATTGTTAAACTTCAACATGGGGAATACGTATCCCTTGGAAAGgtttgcctatagaacttaaattctacatagaggatggtggtatatgataaaatctcatcatgctctttcattgcctggatcacacaattcacag
 || |||||   |||||| || ||||| ||  | ||| |  | ||  | ||||| || |||||||| ||||||||||| ||||||||||| || || ||||| ||   ||   |  || | |      |||| |  ||| | |    |  | | |   ||                                  
TGACATTGGACAATTCCATCCCGATGGTTGCTTAGAAATTGTAGACCGGAAGAAGGACATTGTTAAGCTTCAACATGGCGAATACGTATCGCTGGGCAAGgtatg---atgctatctacacttggacaagagaa--gtgatttcgtttttacttttggcag---------------------------------