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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagatataaacgaaaatgcatactaaatgacgttatcatttctcgatacttatgtttctccttggggcag

Basic information

species Arabidopsis thaliana
transcript AT1G75380.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125214696|gb|EL229014.1|EL229014
EST:     CAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATTAATTGGCTGTGTACATAAACTAAGAAGAAAGTCATTG
genomic: CAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTA-TTGGCTGTGTACATAAACTAAGAAGAAAGTCATTG
EST: gi|124951678|gb|EL027022.1|EL027022
EST:     TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATTA
genomic: TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTA
EST: gi|124879344|gb|EH958781.1|EH958781
EST:     GTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATTATTGGCTGTGTACATAAA
genomic: GTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTATTGGCTGTGTACATAAA
EST: gi|164166330|gb|EL988496.1|EL988496
EST:     GGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAACTATTGGCTGTGTAC
genomic: GGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTATTGGCTGTGTAC
EST: gi|125262939|gb|EL277024.1|EL277024
EST:     TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATT
genomic: TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATT
EST: gi|124773205|gb|EH863334.1|EH863334
EST:     CTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATTATTGG
genomic: CTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTATTGG
EST: gi|124837942|gb|EH922381.1|EH922381
EST:     TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG                         CTCGATCAACAATTATTGGCTGTGTAC
genomic: TTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAGgtaaggagat ... cttggggcagCTCGATCAACAATTATTGGCTGTGTAC