Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGAGgtcaaatcttatattcctatgtgataactgtttctccttcgcaaggtagttagctgatactaatagagttcacacatgttacacag

Basic information

species Arabidopsis thaliana
transcript AT1G71696.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 11
CCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGAGgtcaaatcttatattcctatgt---gataactgtttctccttcgcaaggtagttagctgatactaatagagttcacacatgttacacag----------
 ||||| |||||||| |||||||||||||| || ||| |||| || |||||||| || || |||||||| || |||   || ||||| || ||  | |||||    |  | | ||  |   |   | || |||  | ||  |  | || ||  | | | ||     |   ||    |  | || || |           
TCCAATCTATGGTGGGATGCAAGACTGGAACTATATACATGGAGGTTGCTTTGAGTTAACCCTGGAAATTAGTGACGTAAAATGGCCAAAGGCAGCTGAGgtatttttctttttttttgcatctagttatctgcctatcaatttccagataacttgataatcactttgttgtgt-tatttcttccaaattcttctatag

upper sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 9
-----------------------------------------------------------------CCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGAGgtcaaatcttatattcctatgtgataactgtttctccttcgcaaggtagttagctgatactaatagagttcacacatgttacacag
                                                                 |||||| |||||||| |||||||||||||| || ||| |||| || |||||||| || |||||||| || || ||||  |||||||| |||||   |||                                                                                       
GTACTACGTAGGTTGTGTATTTGTTGGCTTTGAATCAAACAACATCATTGCTTGTGGTCCAGgtacccaatatatggtggtatgcaagactggaactatatacatggaggctgctttgagttaactctggagattagtgacacaaagtggccaaaagc---agat--------------------------------------------------------------------------------------

upper sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
CCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGAGgtcaaatctta-------tattcctatgt-gataactgtttctccttcgcaaggt-----agttagctgatactaatagagttcacacatgttacacag--
||| || ||||||||||||||||| ||||| || ||| |||| || || ||||||||||| ||||| || || |||||||||||||||||  |    |||||   |||| |       | |   |   |  |||     | ||  | |    ||      | ||   || || |  |  | |    |  |  || |||   
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattg-tgaattggttatttcctaaacaatc