1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctctcaccctttgatgatcttaaaaacaactctaagataaaagcctgatctgattatatgtatcaatgatctgatatctgttctgtttatag
species | Arabidopsis thaliana |
transcript | AT1G61250.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG ATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTAGCEST: gi|124793949|gb|EH883628.1|EH883628
genomic: TCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctc ... ctgtttatagATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTAGC
EST: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG ATATTCTACTTCAEST: gi|125208102|gb|EL223056.1|EL223056
genomic: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctc ... ctgtttatagATATTCTACTTCA
EST: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGG- ATATTCTACTTCATTGGGTTTGCATEST: gi|125031336|gb|EL103605.1|EL103605
genomic: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctc ... ctgtttatagATATTCTACTTCATTGGGTTTGCAT
EST: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGG ATATTCTACTTC
genomic: TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctc ... ctgtttatagATATTCTACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGgtaagctctctcaccctttgatgatcttaaaaacaactctaagataaaagcctgatctgattatatgtatcaatgatctgatatctgttctgtttatag
- - - - - - - - - - - - - - - - - AAGCAA