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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatctctggggttttacaatgtatataattaaactctgtttctgtcaaggctctgatatataaatttgttttatcctacag

Basic information

species Arabidopsis thaliana
transcript AT1G56340.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124943322|gb|EL019512.1|EL019512
EST:     AATCAAAGGATGCTCTTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGAC
genomic: AATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGAC
EST: gi|86064682|gb|DR360439.1|DR360439
EST:     GAGTCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: gi|164103592|gb|ES153308.1|ES153308
EST:     GAGGAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
genomic: GAGGAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
EST: gi|116465699|gb|EG508291.1|EG508291
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: gi|116465718|gb|EG508310.1|EG508310
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: gi|164037642|gb|ES135665.1|ES135665
EST:     TCCTGCTGAATCCGACC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
genomic: TCCTGCTGAATCCGA-Cgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
EST: gi|116465735|gb|EG508327.1|EG508327
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: gi|116482410|gb|EG525002.1|EG525002
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: gi|164121228|gb|ES188340.1|ES188340
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGA
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGA
EST: gi|124738560|gb|EH829814.1|EH829814
EST:     GAATCAAAGGATGCTCCTGCTGAATCCGAC                         GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGA
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatctctggggttttacaatgtatataattaaactctgtttctgtcaaggctctgatatataaatttgttttatcctacag

- - - AGGATG