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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATCCTGAAATCCAGAAGACTCCAAAGACCGACAAACTAAGGGAATGgtatgagatcgcgactgttctgtttttacttgtttgtcagtgttatgtacatttgttggcactaatcacattcctaccttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G55970.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55970.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATCCTGAAATCCAGAAGACTCCAAAGACCGACAAACTAAGGGAATGgtatgagatcgcgactgttctgtttttacttgtttgtcagtgttatgtacatttgttggcactaatcacattcctacctt---ttcag
| || |||||||| || || ||  | || ||||| ||||||||| | ||||| |||||||| || ||||||||||||||  |||||||| | ||||| ||||| ||  |   |      ||  | |||||   |  ||| | |||  |    | |||  || | ||  |     ||| ||    ||||
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaagacctt-tgttgacacttctgttactc--tgctcacttttagctcttctagtttaca-tgatttctgatgtactttacactcag

upper sequence: AT1G55970.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
GCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATCCTGAAATCCAGAAGACTCCAAAGACCGACAAACTAAGGGAATGgta----tgaga---tcgcgactgttctgtt-------tttacttgtttgtcagtgttatgtacatttgttgg-cactaatcacattcctaccttt--tcag----------------------
|||| |||||||||||||||||| | |||||||| ||||| ||| | || |||||||| ||||| ||||| ||||||||  | || || || |||||||||||    | | |   ||  ||      |  |       |  | |||  |    || |||  |  |     ||  ||     | |||| ||| || |  |  |                      
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag