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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGGGTTCTAAACTTTCTGGAAATGTCTTCAACATACTTTTTAACCTCAACAAGTTTATGGCGTTTGAAACGCGTGATCCCTTCCTCATCCGCCAGgtatcacaaaatatagtaaataccttaaagctagctatacatacttatagagatattcatttctcaatgattgattgctgatacatag

Basic information

species Arabidopsis thaliana
transcript AT1G54450.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 11
TTTGAAGGGTTCTAAACTTTCTGGAAATGTCTTCAACATACTTTTTAACCTCAACAAGTTTATGGCGTTTGAAACGCGTGATCCCTTCCTCATCCGCCAGgt-atcacaaaatatagtaaataccttaaagctagctatacatacttatagagatattcatttctcaatgattgattgctgatacatag
 || ||  | | |||||| || |||||  | ||||| || ||||| || ||||||||||| ||||| |||||||| |||||||| |||||||| |||||||| || | ||    || ||||  | ||| |  |      |  || | |   | |||   |||    |||| || ||||  |        
CTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataatccttaataaa--ctttagatttgctgccaagtattaagttaaata---attggctaatgtttaattgtag--------