Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaactattctaatttcaactctctactttgagaattttgttggttttgacataatttcaacattcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G51590.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 10
GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaactattctaatttcaactctctactttgagaattttgttggttttgacataat-ttcaacattcag--------------------------------
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GGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatga--tattgcacttacaa-tatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag
upper sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 9
GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgta-------------aaaactattctaatttca-actctctactttg----agaattttgttggttttgacataatttcaacattcag--------------
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GGAGAAATCAATGAAAGGTCTATCAAGTTTGATTAGGAGATCAACACCATCTTCATTTGCTTATATATGTGAGAAGAATGGAGGATCTCTAACAGACAAAgtatgatattgcacttacaatatttgtattgtcatatttagtattttaccatatgatgttctgagtgttggtataattttt-cattcgactgagtacctacag
upper sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 10
GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaact-attctaat---ttcaact-ctctactttgagaatttt-----gttgg--ttttgacataatttcaacattcag-----------
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GGAGACATCTATGAAAGGTCTGTTAAGCTTGGTCCGAAGAACAACACCATCATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttgattccaaaatactcatttgttctactgcactaatatttgaccattagcattttggtgctatttgttttttctatatatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116428419|gb|EG471011.1|EG471011EST: ATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAG ATGGATGAATTGGCGTGCTTTGCTCCTGGAATGTTGGCTTTAGGAGCTTCA
genomic: ATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaacta ... caacattcagATGGATGAATTGGCGTGCTTTGCTCCTGGAATGTTGGCTTTAGGAGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaactattctaatttcaactctctactttgagaattttgttggttttgacataatttcaacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC