Sequence
atgc intronic sequence ATGC exonic sequenceGTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTGGAATTCAGgttagttaagtcttgtatttaatatgtcaataataaactacatttctcctgagagaattcctaatattggtcaatttgtatag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G48850.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G48850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 10
GTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTGGAATTCAGgt--tagttaagtcttgtatttaatatgtcaataataaactacatttctcctgagaga---attcctaatattggtcaatttgtatag-----------------
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GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgctgttctataattacta-attagtttttt-ctagatatgcactgacagtcacatttctatatttgttttacttatattatctgtattgacaatcag
upper sequence: AT1G48850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G35560.2 (Glycine max), 5'ss of exon 10
GTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTGGAATTCAGg--ttagttaagtcttgtatttaata------tgtcaata---ataaactacatt--tctcctgagagaattcctaatattggt-caatttgtatag--------
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GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124939076|gb|EL015649.1|EL015649EST: TGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTAGGAATTCAG GGAGGGATCTCAAATGGTGAGATAATAAACA
genomic: TGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGT-GGAATTCAGgttagttaag ... atttgtatagGGAGGGATCTCAAATGGTGAAATAATAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTGGAATTCAGgttagttaagtcttgtatttaatatgtcaataataaactacatttctcctgagagaattcctaatattggtcaatttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA