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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGAGCTCACCGCTAATTGTATTTACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCACTACCGCCCATCTGCAACAATTTTCGCCTTCACAAACCAgtaagtgtttgttcatctgtcaatcaggaaatgtcctatgtatgcaacttttaatcgatgaaatgggttttgatcgatcttttggtttatttcctttag

Basic information

species Arabidopsis thaliana
transcript AT1G32440.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32440.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 5'ss of exon 10
CACTGAGCTCACCGCTAATTGTATTTACGAGAACCGGATCCATGGCAGTGCTTCTAAGCCACTACCGCCCATCTGCAACAATTTTCGCCTTCACAAACCAgtaagtgtttgttcatctgtcaatcagg---------aaatgtcctatgtatgcaacttttaatcgatgaaatgggttttgatcgatcttttggtttatttcctttag-------------------------------------------------------
| ||  || | ||  | ||||| |||||  ||||||| ||||||||||| ||||| ||||||||||| || ||  | |||||||| || || |||||  ||||||| ||| ||    |   |   |           |||| |  | |   |     ||| | |  |  ||||   |||||       | |   |  ||      ||                                                        
CCCTTTGCACCCCAATTATTGTGTTTACACGAACCGGCTCCATGGCAGTCCTTCTCAGCCACTACCGGCCCTCGTCTACAATTTTTGCATTTACAAATGAgtaagttttttttggatttctacctacatgcaatgccaaatcttttttccctagtgttttcattttagtaaatcaattttgtaaacattctaaataaataaatgataaaagttgaaaaagatgctctggaggactgaccattatgaggaaactgttgttgcag