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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactttgtcttttcttcattttcatggttcatgctaaatcttgagataatatgctttcttgatttatgacctttggttttaaatctggaacag

Basic information

species Arabidopsis thaliana
transcript AT1G29890.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 11
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactttgtcttttcttcattttcatggttcatgctaaatcttga---gataatatgctttcttgatttatgacctttggttttaaatctggaacag----------
||||||||||| ||||||||||| ||||||| ||| |||||  |||| |||||||| || ||||||||||| || |||||||| || ||||  |||  || |||  |  | |   |  ||   ||||    |   |   |||| |   ||  | |  |||||   |   |  |    | |  || |  |   | |            
GCTGGTTACCTATGGTATGAATATATCTACAGGCTAGACAAAATTACATACAACAAGTACCATCCCTACACGTCATGGATTCCTATCACgtacgtataaaaaacactaccatgattatatgg-catgtggtaaattgtttctttaattgaatagacactttcagcaaaaagaaaacattgaattgacacaacaccgttgttttacag

upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 6
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactt--tgtcttttcttcattttcatggttcatgctaaatcttgagataatatgctttcttgatttatgacctttggttttaaatctggaacag-----
| ||| |  || ||||||||||| || |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| || |||||||  |||  |  || ||    | | ||| | ||     |||  ||||| |   |       |||||||||    | ||  |  |  |||    | ||    |          
GTTGGCTTTCTGTGGTATGAATATATATACAAGCTAGACAAAGTTACATACAACAAGTACCATCCCTACACATCATGGATCCCTATAACgtacgtataagaaatttaacatgtattcataatcgatgtggcacatgccatgcc----agcaatatgcttaga-gcttagttgcagttgacaatgaactgtgtttctttcag

upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 11
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactttgtcttttcttcattttcatggttcatgctaaatcttgagataatatgctttcttgatttatgacctttggttttaaatctggaacag
|| || || || ||||| ||||| |||||||||||||||||   ||| || ||||| || ||||||||||| || ||||||||||||||||  | |  |  |||| |       |  ||     |    ||||  ||  |  |      ||||| ||  |  |                               
GCCGGCTATCTGTGGTACGAATATATCTACAAGCTGGACAAACATACATATAACAAGTACCATCCCTACACGTCGTGGATTCCAATAACgtatgcataacaaactgttatcaccccccaaaagaacttatcattgtagctgat----ccatatgtttcttacag------------------------------

upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 12
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactttgtcttttcttcattttcatggttcatgctaaatcttgagataatatgcttt---cttgatttatgac--ctttggttttaaatctggaacag--------------------------------------------------------
| ||| ||| | |||||||||||||| |||||||||||||||||  | ||||||||    || |||||||| |||||||||||||| |||| |||   | | | ||  | | ||| |  ||    |  || ||| |   |  |  | |    | ||||   |||||   ||  |     | |  | | || |||||                                                           
GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGACAAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgttatccatttattttattcctt-ttgctgttctttatgtt---ttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatatatggaatgcatttatatttttcttttcagctccttctattgattcttttgcctattatttttcag

upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 12
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaactttgtcttttcttcattttcatggttcatgctaaatcttgagataatatgctttcttgatttatgacctttggttttaaatctggaacag---------------------------------------------------------
| ||| ||| | |||||||||||||| ||||||||||| |||||  | ||||||||    || |||||||| || ||||||||||| |||| |||   ||| | ||  | | ||| |  |  |  |  ||  |  |   | ||    |  | |    |    |  ||  |    | |  | | |  |||||                                                            
GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGATAAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTACgtgagtgttaactatttattttattccttttgctgttctttatttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatacatggaatgcattttatatttttctgttcagctccttctattgattcttttacctattatttttcag

upper sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 6
GCTGGTTACCTTTGGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTGGATTCCAATAACgtcagtaccaacaa-ctttgtcttttcttcattttcatggttcatgctaaatcttgagataatatgctttcttgatttatga---cctttggttttaaatctggaacag---------------------------------------------------------------------
| ||||||  | |||||||||||||| |||||||||||||| ||||| || || || |  |||||||||||||| ||||||||||||||||  ||   || |  || | ||| |   ||| | |  |   |  |   |     |  |  ||| |       ||  ||| |     || | || |   ||   ||| |                                                                      
GTTGGTTATTTGTGGTATGAATACATTTACAAGCTGGACAAAGTTACATATAATAAGTTCCATCCCTACACATCATGGATTCCAATAACgtatgtgttaagagtctctctctctctctcactcttctttcttctctcattctctctgtcaatttatggaaatgtattaaggagttctatagtgtggcatgaagaatatcagatctaattgaacattccagtttagtctcagtatctcattatcatctttgttttattgtgattccag