1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCTACTCTATCCGCGAAGCTGCAGCAAACAACCTAAAGCGCCTCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttgagcattttatactaaaaccatctgtctgtttatcttattgttgatctatgtcaagtacctcacctataacatctaatctccagctttggtcccttttctttggatatcactaaagctgcaaatattgagatctccagattgacctttatcatataaacag
species | Arabidopsis thaliana |
transcript | AT1G25490.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG GTATTGGACATGGTCAACAATCCGCACTACCTACACAEST: gi|164197672|gb|ES143454.1|ES143454
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACA
EST: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG GTATTGGACATGGTCAACAATCCGCACTACCTACACAEST: gi|47830292|gb|CK119976.1|CK119976
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACA
EST: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG GTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTA
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTACTCTATCCGCGAAGCTGCAGCAAACAACCTAAAGCGCCTCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttgagcattttatactaaaaccatctgtctgtttatcttattgttgatctatgtcaagtacctcacctataacatctaatctccagctttggtcccttttctttggatatcactaaagctgcaaatattgagatctccagattgacctttatcatataaacag
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG