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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaaggtcttaaagtaatgtggatttacttttctagaaatcattggtatgttctgcgagtgattattacctgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23310.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 8
GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaaggtcttaaagtaatgtggatttacttttctagaaatcattggtatgttctgcgagtgattattacctgtgcag--------------------
   || || ||||| ||||||||||||||||| || ||||| || |||||  ||| ||| ||||||||||||||||     |  | |  | | | |  | || |||| ||  ||    |  ||||| | ||||   |   |    ||                      
ACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTTgtaagtcaaacaatattcattgtttttg-tgcaattatctaaaa--cagctttccgttcttccagtggccaaaccacaagctttaaaactggaaatatgatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125096698|gb|EL153407.1|EL153407
EST:     AAGGTTGTTCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAG
genomic: AAGGTTG--CATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAG
EST: gi|125225261|gb|EL239346.1|EL239346
EST:     CCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCAATAATGACC
genomic: CCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCA-TA-TGACC
EST: gi|124847314|gb|EH931751.1|EH931751
EST:     TGCGCAAATCTTT                         ATGGGTTTGATGGTTAATTCCTCCAAAGCCTGGAGACATTTCATATGACCA
genomic: TGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAA-TCCTCCAAAGCCTGGAGACATTTCATATGACCA
EST: gi|125192374|gb|EL207328.1|EL207328
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGATTAATCCTCCAAAG
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAG
EST: gi|124710790|gb|EH802192.1|EH802192
EST:     GTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: GTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125026180|gb|EL098449.1|EL098449
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAA
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAA
EST: gi|125104424|gb|EL158503.1|EL158503
EST:     CGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|124819787|gb|EH904653.1|EH904653
EST:     CTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125187658|gb|EL202612.1|EL202612
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGA
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGA
EST: gi|125049958|gb|EL122227.1|EL122227
EST:     CATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|124948016|gb|EL023811.1|EL023811
EST:     CGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125311118|gb|EL325203.1|EL325203
EST:     CTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125060829|gb|EL129506.1|EL129506
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGGTTTGATGGTTAATCCT
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGG-TTTGATGGTTAATCCT
EST: gi|125000948|gb|EL073217.1|EL073217
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCT
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCT
EST: gi|124792413|gb|EH882092.1|EH882092
EST:     CCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAA
genomic: CCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCA-
EST: gi|124741575|gb|EH832737.1|EH832737
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTA
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTA
EST: gi|86074126|gb|DR369883.1|DR369883
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|86074135|gb|DR369892.1|DR369892
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|124763447|gb|EH853577.1|EH853577
EST:     AGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: AGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125210753|gb|EL225707.1|EL225707
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         TATGGGTTTGA
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcag-ATGGGTTTGA
EST: gi|125279070|gb|EL293155.1|EL293155
EST:     TTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCA
genomic: TTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCA
EST: gi|124998412|gb|EL070681.1|EL070681
EST:     TTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGAACATTTCATATGACCA
genomic: TTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGA-CATTTCATATGACCA
EST: gi|125274207|gb|EL288292.1|EL288292
EST:     TTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCC
genomic: TTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCC
EST: gi|125245442|gb|EL259527.1|EL259527
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCT
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCT
EST: gi|124712516|gb|EH803918.1|EH803918
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATAGGGTTTGATGGTTAATCCTCCAAAGCCTGGAG
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagAT-GGGTTTGATGGTTAATCCTCCAAAGCCTGGAG
EST: gi|125256988|gb|EL271073.1|EL271073
EST:     TTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATT-CATATGACCAG
genomic: TTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|125269816|gb|EL283901.1|EL283901
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAA
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAA
EST: gi|125194550|gb|EL209504.1|EL209504
EST:     CGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|124948592|gb|EL024328.1|EL024328
EST:     CGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
genomic: CGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAG
EST: gi|124755191|gb|EH845321.1|EH845321
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTACCAAAGCCTGGAGACATTTCATATGAC
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCT-CCAAAGCCTGGAGACATTTCATATGAC
EST: gi|125118774|gb|EL167323.1|EL167323
EST:     ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT                         ATGGGTTTGATGGTTAATCCTCCAAAGCCTG
genomic: ACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTgtaagtcaaa ... acctgtgcagATGGGTTTGATGGTTAATCCTCCAAAGCCTG