1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTTACTATGAAGCTCAACAAGATGGAGGAGACTATGGATACAACAATGTTGCTCCTCCAGCAGACCATGGATATGATGGTCCTCCGCCTCAGGGACGTGgtacgttgatgattttgttacactaatgttttctcattaaataatgatgagttgtaaatgtttaaaaattgttggaacag
species | Arabidopsis thaliana |
transcript | AT1G20220.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGCTCCTCCAGCAGACCATGGATATGATGGTCCTCCGCCTCAGGGACGTG GACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGGAGGAGGCCGTGGTGGATEST: gi|125251142|gb|EL265227.1|EL265227
genomic: TGCTCCTCCAGCAGACCATGGATATGATGGTCCTCCGCCTCAGGGACGTGgtacgttgat ... gttggaacagGACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGGAGGAGGCCGTGGTGGAT
EST: ACCATGGATATGATGGTCCTCCGCCTCAGGGACGTG GACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGGAGGAGGCCGTGGTGGATEST: gi|164003381|gb|EL993993.1|EL993993
genomic: ACCATGGATATGATGGTCCTCCGCCTCAGGGACGTGgtacgttgat ... gttggaacagGACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGGAGGAGGCCGTGGTGGAT
EST: GATGGTCCTCCGCCTCAGGGACGTG GACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGG
genomic: GATGGTCCTCCGCCTCAGGGACGTGgtacgttgat ... gttggaacagGACGTGGCCGTGGAAGGGGAGGTCGTGGAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTACTATGAAGCTCAACAAGATGGAGGAGACTATGGATACAACAATGTTGCTCCTCCAGCAGACCATGGATATGATGGTCCTCCGCCTCAGGGACGTGgtacgttgatgattttgttacactaatgttttctcattaaataatgatgagttgtaaatgtttaaaaattgttggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA