Sequence
atgc intronic sequence ATGC exonic sequenceGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGgttagttagtatattccaaccttctatatggtcaaacaaagatgttatgggatctgctgaagatttcattataatataattgtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G18470.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G18470.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 10
GCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGgtta--gttagtatattccaaccttctatatggtcaaacaaagatgttatgggatctgctgaagatttcatt-ataa-tataattgtgcag---------
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ATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAAGCACGACTATACCATGAGGGAGCAATTGGgtaatcctcatttcattttattactacgttggcgtgtaccatcaaataatgtaacttgcatgctgtctcattcatatctacgacaatgtctctagtcaat
upper sequence: AT1G18470.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 10
GCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGgttag--ttagtatattccaaccttctatatggtcaaacaaagatgttatgggatctgctgaagatttcatt-ataatataattgtgcag----------
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ATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACATGCACGACTATACCATGAGGGAGCAATTGGgtaagcattatttcaatttattactatgttggtgtgtaccatcaaataatgtaacttgcatgttgtttcattcgttttttttttttgcacagcaaaaatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079365|gb|DR375122.1|DR375122EST: ACAAGCTCGACTGTACTTTGATCAAGAATCTGG -TACAATACATTCAGTGGTCATCCGCCTGAGATAGTCAAGAAAATGCCAAA
genomic: ACAAGCTCGACTGTACTTTGATCAAGAATCTGGgttagttagt ... aattgtgcagTTACAATACATTCAGTGGTCATCCGCCTGAGATAGTCAAGAAAATGCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGgttagttagtatattccaaccttctatatggtcaaacaaagatgttatgggatctgctgaagatttcattataatataattgtgcag
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - CAAGCT