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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaatagaaaaactgttataggtattctgtgacttaactcaaccatcatccataccttttttgaatcaaagatattttcgttatccag

Basic information

species Arabidopsis thaliana
transcript AT1G17370.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaa-----tagaaaaactgttataggtattctgtgacttaactcaa--ccatcatccataccttttttgaatcaaagatattttcgttatccag---
| ||||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || |||||||| || ||||| |||||||||||||||| |     |        | |||    || | |   | |||   |||  ||||       ||  || ||  ||  || |  ||       |  |    
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt

upper sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaatagaaaaactgttata-----ggtattctgtgacttaactcaaccatcatccataccttttttgaa---tcaaagatattttcgttatccag--
   |||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || || ||||| || ||||| |||||||| ||||||||| |  |    | || ||     |  | |     |    ||  |  || || |  |   ||  |||||   |     |  || |  | || ||   
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc

upper sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaata---------gaaaaactgttataggtattctgtgacttaactcaaccatcatccatacctttt-ttgaatcaaagatattttcgttatccag-----------
| ||||||||||| ||  | | |  ||| |||||||| |||||  ||||||| ||||||||||| || || ||||||||||||||||||  | |          ||||  |    |   || | | |   ||   | |  | |        | | |  || | |     | ||  |  || | ||            
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125086396|gb|EL145882.1|EL145882
EST:     TACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: TACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|116486725|gb|EG529317.1|EG529317
EST:     AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|116486728|gb|EG529320.1|EG529320
EST:     AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|124752366|gb|EH842496.1|EH842496
EST:     GAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCC
genomic: GAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGA-Ggtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCC
EST: gi|116386137|gb|EG428729.1|EG428729
EST:     AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|116486731|gb|EG529323.1|EG529323
EST:     AGAACAATGCTCAGCACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|116386087|gb|EG428679.1|EG428679
EST:     AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTC
EST: gi|124849710|gb|EH934147.1|EH934147
EST:     AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAG                         GTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGG
genomic: AGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaataga ... cgttatccagGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGG