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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTATCTCTCGTATTTGGATTCTGTGAAGTACTTTAGACCTGATATCAAGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagttctggtttttcaacctaggtttatgtggtcttctacattacatggatgattcaagggtattataccctgatgctttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G16710.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 9
TGTTTATCTCTCGTATTTGGATTCTGTGAAGTACTTTAGACCTGATATCAAGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagtt----------ctggtttttc------aacctaggtttatgtggtcttctacatta----catggatgattcaagggtattataccctgatgctttttcag-------------------------------------------------------
||||||| | || || ||||||||||| ||||||||||||||||| || ||  | |     || |||||  |||| || |  || ||||| |||||||| |||| ||          |||  ||||       |    |  ||||| ||   | | |  ||     ||    ||  |    |    || | |  ||  | ||||                                                          
TGTTTATTTGTCATACTTGGATTCTGTTAAGTACTTTAGACCTGAGATTAAAACAGTATCCGGAGAGGCCTTGCGTACATATGTATACCATGAAATTCTGgtaatttaccatccatgctgactttttgttgctagtacaaatttat-tgccttaccaggttttgatcaaaactgtctacgagaccatacaacaggaaaccttttttcttcttctttttagctagcatttgttctgggtctaatctgccctcaccgtgtacag

upper sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
TGTTTATCTCTCGTATTTGGATTCTGTGAAGTACTTTAGACCTGATATCAAGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagttctggtttttcaacctaggtttatgtggtcttc-tacattacatggatgattcaagggtattataccctga--tgctttttcag--------------------
|||||||||||| ||| ||||||||||||||||||| || ||||| || || || |  | |||||||||||| || || || |||||||| |||||||| || |||| | || || |  |     ||||| |  ||||  |     |     ||| ||        || ||   ||   |  |   | |                     
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattgggctattggcttatatatccgattctctttccag

upper sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 5'ss of exon 11
TGTTTATCTCTCGTATTTGGATTCTGTGAAGTACTTTAGACCTGATATCAAGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagttctggtttttcaacctaggtttatgtggtcttctacattacatggatgat-tcaagggtattataccctgatgctttttcag--------------
 || ||  | || ||||||||||||||||| |||||| | || ||| |   | |||  ||||| ||||||||||||||||| |||||||| |||||||| || ||  ||  |  |     || |   |||   |  ||   |  | ||    | |  | | | | |    |  ||| |   ||| ||               
GGTGTACTTGTCATATTTGGATTCTGTGAAATACTTTCGCCCAGATGTGCGGACTGTCAATGGAGAGGCTCTGCGCACTTTTGTTTACCATGAAATTCTGgtgagcactcatcctgtctgctggagatatactgagtt--gctgtgcaccagtaacattatgtgaacaggattctgttatctttgcaattgggtgtatcaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116434362|gb|EG476954.1|EG476954
EST:     AGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTT                         ATTGGTTATCTGGAATACTGCAAATTGCGTGGTTTCACGAGCTGCTACATA
genomic: AGTCTGCTAATGGGGAGGCTCTGCGCACTTTCGTTTACCACGAAATTCTTgtaagttctg ... gctttttcagATTGGTTATCTGGAATACTGCAAATTGCGTGGTTTCACGAGCTGCTACATA