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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTCGGAAAGCAGAACCCCCAACTTCTGAGGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGGgttagtactatatactggagatcgttttcttgtttgggccactggttgaatcgctaaattagtgattgatcagagcaatcacgtctatatgaatatatgtgatcccatgactcaatgcctcttattaattgcttaaaacattcag

Basic information

species Arabidopsis thaliana
transcript AT1G16190.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079082|gb|DR374839.1|DR374839
EST:     CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGG                         GGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA
genomic: CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGGgttagtacta ... aaacattcagGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA
EST: gi|125217211|gb|EL231294.1|EL231294
EST:     CCTACGAAGGATCTGACGG                         GGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA
genomic: CCTACGAAGGATCTGACGGgttagtacta ... aaacattcagGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA
EST: gi|164200881|gb|ES000450.1|ES000450
EST:     CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGG                         GGATGTGGATATCTTCGATCAACC
genomic: CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGGgttagtacta ... aaacattcagGGATGTGGATATCTTCGATCAACC
EST: gi|301502782|gb|HO208322.1|HO208322
EST:     CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGG                         GGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA
genomic: CAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGGgttagtacta ... aaacattcagGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAA