1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGATCTTCTGCCTGAAGCAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatcatggtcctgtctcctcgtactaaatttccaccacaatgcagttagcttcatctctcacaaatcattattaataataccatgtcctcatctcaatag
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAG GTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAAEST: gi|125019003|gb|EL091272.1|EL091272
genomic: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatc ... atctcaatagGTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAA
EST: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAG GTTGCTAAGATTGAGACTGAEST: gi|164037138|gb|ES096619.1|ES096619
genomic: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatc ... atctcaatagGTTGCTAAGATTGAGACTGA
EST: CACGGAAATGTCCAG GTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAAEST: gi|164057376|gb|ES146762.1|ES146762
genomic: CACGGAAATGTCCAGgtaattgatc ... atctcaatagGTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAA
EST: GATGCTTGAGAGAGACCCACACGGAAATGTCCAG GTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAAEST: gi|116438054|gb|EG480646.1|EG480646
genomic: GATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatc ... atctcaatagGTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAA
EST: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAG GTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAA
genomic: CAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatc ... atctcaatagGTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGATCTTCTGCCTGAAGCAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTCCAGgtaattgatcatggtcctgtctcctcgtactaaatttccaccacaatgcagttagcttcatctctcacaaatcattattaataataccatgtcctcatctcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT