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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcaccttcttctacttcatatatatcttatctttacttagaaaccttgatcattaagattgatggtctgtctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G08860.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcacc-ttcttctacttcatatatatcttatctttacttagaaac--cttgatcattaagattgatggtctgtctttcag
||  |||||||||  |||   || || |  || | ||||||| |||| |||||||| ||||| |||||||| || ||||||||||| || || ||||||||| | | ||  || |||| ||      |    | ||  | | ||  |     |||| |  ||||  |          | || |||
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcatctttcttgtttgttaacctcttcaaaaaat-ttccag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 10
CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcaccttcttctact-tcatatatatcttatctttacttagaaaccttgatcattaagattgatggtctgtctttcag
||  |||||||||  |||   || || |  || | ||||||| |||| |||||||| ||||| |||||||| || ||||||||||| || || ||||||||| | | ||  | |||| || |     |       | |  | ||   | | | | |    |||          ||| |  |||
CTGTTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattttcttctattgctcacggtgattatgaatttcttatcttagtttgccaagcacttcaacatgtgtc-cag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 8
CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcaccttc--ttctacttcatatatatcttatctttacttagaaaccttgatcattaa--gattgatggtctgtctt--tcag
||  |||| ||||  | |   |||||    |  ||||||||| |||||||  | || ||||| |||||||||||||| |||||||| || || || || ||| | |   ||||   | | |   ||   |||||| |      ||   ||  ||  |  || |      | || | | | ||   |||
CTATTTGTTGATCAATTTTGTGAGAAGCCTCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTGCTGTCGATTTTACCGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccag