Sequence
atgc intronic sequence ATGC exonic sequenceGTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctactggcatgcttgttataatctggggtacggcttcttctctaatcacatgcattgttaattttaccag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G08720.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 11
GTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctactggcatgcttgt-tataatctggggtacggcttcttctctaatcacatgcattgttaattttaccag
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GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatttgaga-----aaatct--ttgttattctgtagctcatttgtttaggcacatgca-gcatgtgtctgatctgcatttct-cttcatttc-actgacatgattctgtcaatatgttag
upper sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 11
GTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctactggcatgcttgttataatctggggtacggcttcttc--tctaatcacatg-cattgttaattttaccag
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GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatatgaga-----aagtctttgttattct-----gtagtgca-tttgtttagacacatgcagcatgtg-tctgatctgcattctctacattccactgacatgattttatcaatgttag---
upper sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 10
GTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaaccc-----------------------ttaaatctctttactttttgatagaaat-----gcaactttcctact-ggcatgcttgttataatctggggtacggcttcttctctaatcacatgcattgttaattttaccag-------
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GTATGTGATTTTGGGTTGTCACGCCTGAAGCACAACACATTTTTGTCATCCAAATCAACTGCTGGAACGgtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116426459|gb|EG469051.1|EG469051EST: CTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACG CCTGAATGGATGGCTCCAGAAGTTCTACGCAATGAGCCCTCAAATGAAAA
genomic: CTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgc ... attttaccagCCTGAATGGATGGCTCCAGAAGTTCTACGCAATGAGCCCTCAAATGAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctactggcatgcttgttataatctggggtacggcttcttctctaatcacatgcattgttaattttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA