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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGCAAAGCTGCCAAAGATGTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCTGATGTGAAAGTTCCTGGTGAAAGAGCCCCATTGGTTTCAACAAAGgtctgttcttttttccgtctaactatgcattgaaacatttctcagtattatgttgactgtttaatcactgagccatagaggtatggccaaagttccttaa...

Basic information

species Arabidopsis thaliana
transcript AT1G04900.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04900.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G14130.1 (Glycine max), 5'ss of exon 10
ACATGCAAAGCTGCCAAAGATGTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCTGATGTGAAAGTTCCTGGTGAAAGAGCCCCATTGGTTTCAACAAAGgtctgttcttttt-tccgtctaactatgc-attgaaacatttctcagtattatgttgactgttta---atcactgagccatagaggtatggccaaagttccttaa
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CCATGAGGTGCTACCAAAGATGTCTTTGATTGCTTCTGATTTCAGCTACCTACCTGATGTGAAGATACCTGGTGAAAGAGCTCCATTGGTTTCAACTAAAgtatattattgttatacttttaacaaaactgcagttgtttgttttcacatcttgtaaactttagagagaattttaattaactgagttttccttatgaatgcag--