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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAGgttagccacaatttggttggattaaataaatttgttagacataagtctctgttgcaacttttttctagacataacattgttcaagtacttcataactgcaaagttccttgagatttcacccctaatagtaaatagagttgttcacttgtatttttgtgatgaaatactttataattaaaaatttccgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 11
ATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAGgttagccacaatttggttggattaaataaatttgttagacataagtctctgttgcaacttttttc-tagacataacattgttcaagtacttca-taactgcaaagttccttgagatttcacccctaatagtaaatagagttgttcacttgtatttttgtgatgaaatactttataattaaaaatttccgtgcag
 |||||  | || ||||||||||||||||| ||||| || ||||||||||| || || |||||||       |||  ||   |  |||   |||  |||   | |    |  ||   ||||||    |||   |    ||| |   ||    |   || |   |  ||||                                                                                     
GTTTGGGACAGTTCTTGTGTCCCGGGCAATAAGGGCAGCCCATTGCTTAACTTCCATTCAGgtta-------ttttctt---tccaattttttttgtaggtgtga----ccattaatacttttgaggtagttgtgtacttgcttgtgtgaggcggcaaatatgagtttccgcagt--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125108137|gb|EL161182.1|EL161182
EST:     TGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAG                         TTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATG
genomic: TGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAGgttagccaca ... ttccgtgcagTTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATG
EST: gi|125303257|gb|EL317342.1|EL317342
EST:     CAATTAGGGCTGCACATTGCTTAACCTCTATCCAG                         TTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATGGT
genomic: CAATTAGGGCTGCACATTGCTTAACCTCTATCCAGgttagccaca ... ttccgtgcagTTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATGGT