1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTCTCTCCCTGAGCATGAAACCGGACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCGgtttgtttgttttctccctaaaccctattcttactgagaaattgaaatttggttattacgactgggaaactgaatttggtgattacggatgttatatag
species | Arabidopsis thaliana |
transcript | AT5G66470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCATCGGAGCG GATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGAEST: gi|124856265|gb|EH940702.1|EH940702
genomic: TCATCGGAGCGgtttgtttgt ... tgttatatagGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGA
EST: TTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCG GATATGTGGCG
genomic: TTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCGgtttgtttgt ... tgttatatagGATATGTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTCTCCCTGAGCATGAAACCGGACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCGgtttgtttgttttctccctaaaccctattcttactgagaaattgaaatttggttattacgactgggaaactgaatttggtgattacggatgttatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT