Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCTCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttccatttccatttcgtttatcatgttttaattaatcactaattgtaaagctggatcttgacatgcataattgctatttatctcgtgcacctgcatacag

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051155|gb|DR346910.1|DR346910
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|86051159|gb|DR346914.1|DR346914
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125065211|gb|EL132527.1|EL132527
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCCCAAGAAG                         AGCACAGTGTGTTAC
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTAC
EST: gi|124753943|gb|EH844073.1|EH844073
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGT
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGT
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124939519|gb|EL016052.1|EL016052
EST:     CTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125211323|gb|EL226277.1|EL226277
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTG
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTG
EST: gi|124885850|gb|EH964752.1|EH964752
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTG
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTG
EST: gi|125220522|gb|EL234607.1|EL234607
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124775260|gb|EH865389.1|EH865389
EST:     CCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGCTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125300488|gb|EL314573.1|EL314573
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGC
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGC
EST: gi|125221273|gb|EL235358.1|EL235358
EST:     AAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: AAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124896640|gb|EH972854.1|EH972854
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTA
EST: gi|124924054|gb|EL002186.1|EL002186
EST:     TTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124733547|gb|EH824949.1|EH824949
EST:     TCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTG-CAACA
genomic: TCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124927892|gb|EL005585.1|EL005585
EST:     TTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125044660|gb|EL116929.1|EL116929
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAAGAGTTGTGTCAGTGAAGGCT
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAA-GAGTTGTGTCAGTGAAGGCT
EST: gi|86051165|gb|DR346920.1|DR346920
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125272428|gb|EL286513.1|EL286513
EST:     CAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCGGTGAAGGCTCAGGTGACAACA
genomic: CAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124798876|gb|EH888555.1|EH888555
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAA
EST: gi|125097457|gb|EL153914.1|EL153914
EST:     TCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124732220|gb|EH823622.1|EH823622
EST:     CAAAGGATTTTCCTCAAGAAG                         AGCACAGTTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAAC
genomic: CAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAG-TGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAAC
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125163770|gb|EL190540.1|EL190540
EST:     CCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124822612|gb|EH907478.1|EH907478
EST:     CCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGAACAAC
genomic: CCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGA-CAAC
EST: gi|86051162|gb|DR346917.1|DR346917
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125193063|gb|EL208017.1|EL208017
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACA
EST: gi|125189141|gb|EL204095.1|EL204095
EST:     CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|164225497|gb|ES009215.1|ES009215
EST:     TCCCCACCAAAATCTCCTCTGTATCCCCTCAAAGGA-TTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125032006|gb|EL104275.1|EL104275
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAAC
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAAC
EST: gi|124905038|gb|EH979118.1|EH979118
EST:     CCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGACTCAGGTGACAAAC
genomic: CCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAA-C
EST: gi|125009100|gb|EL081369.1|EL081369
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         GGCACAGTGTGTTACAGAAGAGTTGTGTCAGT
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGT
EST: gi|124880231|gb|EH959133.1|EH959133
EST:     CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAAGAAG                         AGCACAGTGTGTTACAGAAGA
genomic: CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAA-GAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGA
EST: gi|124765259|gb|EH855389.1|EH855389
EST:     TCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124786748|gb|EH876427.1|EH876427
EST:     TTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124897940|gb|EH974154.1|EH974154
EST:     TTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|124912153|gb|EH986233.1|EH986233
EST:     CTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTGCAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125092645|gb|EL150468.1|EL150468
EST:     TCCTCACC-AAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGT
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGT
EST: gi|125125200|gb|EL170751.1|EL170751
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAAGCTCAG
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAG
EST: gi|124943579|gb|EL019751.1|EL019751
EST:     CCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|86051156|gb|DR346911.1|DR346911
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|86051163|gb|DR346918.1|DR346918
EST:     TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: TCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
EST: gi|125031310|gb|EL103579.1|EL103579
EST:     CCCCTCAAAGGATTTTCCTCAAGAAG                         AGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA
genomic: CCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttc ... ctgcatacagAGCACAGTGTGTTACAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCTCCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGgtatcatttccatttccatttcgtttatcatgttttaattaatcactaattgtaaagctggatcttgacatgcataattgctatttatctcgtgcacctgcatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG