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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCTCTTCTCCCACTGTCGTCGAGGTTGATCTTGGTGACCGGAGTTATCCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatcttttgtcccataagaccatttcattttaatttagtttagctttttgagctttaattgtcgccaccatcaaacggtcgagttttgacttctct...

Basic information

species Arabidopsis thaliana
transcript AT5G66120.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478278|gb|EG520870.1|EG520870
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: gi|116421947|gb|EG464539.1|EG464539
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: gi|116450338|gb|EG492930.1|EG492930
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: gi|116450349|gb|EG492941.1|EG492941
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: gi|116472855|gb|EG515447.1|EG515447
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: gi|164024535|gb|ES158352.1|ES158352
EST:     CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG                         GCATGTTCACGGAAAGAGAGTGCTTGTGG
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGG