Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAAAGGGTACAAGCTAGTGTTCTTGGGGGATCAAGGCGTAGGGAAAACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGgttcgcctcttatcgattccaacaacactttatgcatcatgtttttttgtcttgatcatcgtctcgacaacaattgtgccttgatacgtgtgaatctgag...

Basic information

species Arabidopsis thaliana
transcript AT5G64990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64990.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv02s0012g00710.t01 (Vitis vinifera), 5'ss of exon 1
AGGAAAAGGGTACAAGCTAGTGTTCTTGGGGGATCAAGGCGTAGGGAAAACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGgt---tcgcctcttatcgattccaacaacactttatgcatcatgtttttttgtcttgatcatcgtctcgacaacaattgtgccttgatacgtgtgaatctgag
          |||||||| || ||||| ||||||||    || |||||||| |||||||||||| | ||||||||||  |||||||| |  |  ||||||||   ||   ||||  |||||   |   |     || |   || |  || | | | | |    || |     |      |||   || |  |||  |    | 
TCTGGCCAAATACAAGCTTGTCTTCTTAGGGGATCAGTCTGTCGGGAAAACCAGCATCATCACTCGATTCATGTACGACAAATTCGATAATACCTATCAGgtaattcaattctttgcgatt---atgtcttcggatccgcgatctgcttctttttaggtttgggtttgtgttatttgattgctgagaaagctgtatagagaaa