1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATAGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgcaactttttcgttttctttgatttttgtttatagatatattgaattatgtgaatcaatgaatcag
species | Arabidopsis thaliana |
transcript | AT5G64250.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453507|gb|EG496099.1|EG496099
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453517|gb|EG496109.1|EG496109
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453516|gb|EG496108.1|EG496108
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039417|gb|DR335172.1|DR335172
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453501|gb|EG496093.1|EG496093
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453499|gb|EG496091.1|EG496091
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039418|gb|DR335173.1|DR335173
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039416|gb|DR335171.1|DR335171
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039415|gb|DR335170.1|DR335170
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTSCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039419|gb|DR335174.1|DR335174
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453500|gb|EG496092.1|EG496092
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453502|gb|EG496094.1|EG496094
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|125240925|gb|EL255010.1|EL255010
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: ATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039413|gb|DR335168.1|DR335168
genomic: ATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039414|gb|DR335169.1|DR335169
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAATGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453497|gb|EG496089.1|EG496089
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|116453503|gb|EG496095.1|EG496095
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAEST: gi|86039420|gb|DR335175.1|DR335175
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgcaactttttcgttttctttgatttttgtttatagatatattgaattatgtgaatcaatgaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - -CGCCGTCG