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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCTTCTCCCATTTCTCCATTGACGACAGCGAAGAAACGTCCCAACGAGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaatctcgatctcgtttttataaaccttaacttctccgtttcgtttcttcgttttcttatctcgatgatgatgatcgagattcaaattctctg...

Basic information

species Arabidopsis thaliana
transcript AT5G64130.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474180|gb|EG516772.1|EG516772
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|152038486|gb|AV824182.2|AV824182
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|125107196|gb|EL160585.1|EL160585
EST:     CTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: CTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|164059669|gb|ES144784.1|ES144784
EST:     GAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTTGGTTTTGGTGGCGTTGAGACATCATC
genomic: GAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTT-GGTTTTGGTGGCGTTGAGACATCATC
EST: gi|152034695|gb|BP834900.2|BP834900
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|86059149|gb|DR354906.1|DR354906
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|86059148|gb|DR354905.1|DR354905
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|86075858|gb|DR371615.1|DR371615
EST:     CCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: CCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: gi|164147607|gb|EL986898.1|EL986898
EST:     CCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CA-TTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAAGGA
genomic: CCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGA-GGA
EST: gi|86059150|gb|DR354907.1|DR354907
EST:     AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG                         CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
genomic: AGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTCTTCTCCCATTTCTCCATTGACGACAGCGAAGAAACGTCCCAACGAGCTCAGAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaatctcgatctcgtttttataaaccttaacttctccgtttcgtttcttcgttttcttatctcgatgatgatgatcgagattcaaattctctg

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatctc