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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgttcttcttcattttctgggatttgattgaatcaatttgtaggattcgagttttgaaagttagtattcattttcgtttgtgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G63620.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 1
ATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgt-----tcttcttcattttctgggatttgattgaatcaat--ttgtaggattcgagttttgaaagttagtattcattttcgtttgtgggcag-------
||||||||||| |||||| | || ||||| |||||||| |||||||| |||||| | || || ||||||||  ||  |||| ||||||||||||||||||||     |   ||||| ||  || |  |  |     | |||      | |  ||        ||    | | || | |||  ||| | |  |        
ATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTTAACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGgtaagggtacccttcaattcttgtgcatccacaacgttaatggcaacaagggtcttccccgaaattcaattttttaattttattttttgttattatctac

upper sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 2
ATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgt-----tcttcttcattttctgggatttgattgaatcaatttgtaggattcgagttttgaaagtt-agtattcattt--tcgtttgtgg-gcag-----
||||||||||| |||||| | || || || ||||| ||||||||||| |||||||| || || ||||||||  ||  |||| ||||||||||||| || |||     |   ||||| ||  || |  |        | |||  | |  |      |  | ||| || | | || ||||  |  ||| |    ||      
ATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtacccttcaattcttgtgcatccgcaacgttaatgggaacaagggtcttcctcaaaattcaatttttatttatttatttattatacactgata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502831|gb|HO208371.1|HO208371
EST:     ATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAG                         CTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGT
genomic: ATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgttcttcttc ... ttgtgggcagCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGT
EST: gi|152038511|gb|AV826144.2|AV826144
EST:     ATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAG                         CTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGT
genomic: ATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgttcttcttc ... ttgtgggcagCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGT