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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACTCTGATGATGACATTAAACTCACTATCTCCAGCTGAATCCAAAGCTATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAGgtttcttcttcttcctctcttctttcctcctccttggtcaactctcttttcgattaaagttgcaaactttcattagttgtcttaggctcttgtgaatttctctatctaggtaatctgttatttcttcaattcgattttttttggtttgctttaggtcgtagagttttaaattttacatctttggagtgtttcacag

Basic information

species Arabidopsis thaliana
transcript AT5G62790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034373|gb|BP826489.2|BP826489
EST:     TATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAG                         GTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTG
genomic: TATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAGgtttcttctt ... tgtttcacagGTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTG
EST: gi|152035000|gb|BP841837.2|BP841837
EST:     TATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAG                         GTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTGGGAAAAGGTG
genomic: TATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAGgtttcttctt ... tgtttcacagGTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTG
EST: gi|152035937|gb|BP865365.2|BP865365
EST:     TATTTCTTTCTTGGATACCTCCAGGTTCAAT-CAATCCCTAAACTCTCAG                         GTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTGGGAAAAGGTG
genomic: TATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAGgtttcttctt ... tgtttcacagGTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGGTG