1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTTCTCAGCGTCAGCGAGTTCGTACTTGCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGgttagtttgaattttgagtttttattggagtttgaatacacagcaatggccaattgtacaattttgtgtttgtgaattttgtgatctatgatatgtgaaa...
species | Arabidopsis thaliana |
transcript | AT5G61500.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGG GGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACEST: gi|164046543|gb|ES194162.1|ES194162
genomic: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTT-Ggttagtttga ... ttttgattagGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAAC
EST: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTG GGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAEST: gi|164214167|gb|ES035321.1|ES035321
genomic: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGgttagtttga ... ttttgattagGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACA
EST: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTG GGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACA
genomic: GCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGgttagtttga ... ttttgattagGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTTCTCAGCGTCAGCGAGTTCGTACTTGCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGGTCTTGgttagtttgaattttgagtttttattggagtttgaatacacagcaatggccaattgtacaattttgtgtttgtgaattttgtgatctatgatatgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaca