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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCGCATCTTGTATTTAGTTCTCTTGTTAAACTTTGCCTCTTCGTCTTTTGCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAGgttagagagatctccacagctacgagctttattcctgtttcctttctaggatctgctttcatttctgctcaatcatgacgtgaaatctgcttttaaaatt...

Basic information

species Arabidopsis thaliana
transcript AT5G59850.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037907|gb|BP802584.2|BP802584
EST:     CTTTTGCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAG                         GTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTGCTTAACGATGCTCTTA
genomic: CTTTTGCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAGgttagagaga ... ttggtatcagGTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTGCTTAACGATGCTCTTA
EST: gi|164012934|gb|ES136205.1|ES136205
EST:     GCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAG                         GTTTTGAGCTTTGAAAA-TGGTGAGAATCAGTGTG
genomic: GCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAGgttagagaga ... ttggtatcagGTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTG
EST: gi|86052270|gb|DR348027.1|DR348027
EST:     GCGGCTGCCATTTTCGATTTCCAAAG                         GTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTGCTTAACGATGCTCTTA
genomic: GCGGCTGCCATTTTCGATTTCCAAAGgttagagaga ... ttggtatcagGTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTGCTTAACGATGCTCTTA
EST: gi|124749624|gb|EH839754.1|EH839754
EST:     GCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAG                         GTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTG
genomic: GCTCCAGAGTTTTTGTGCGGCTGCCATTTTCGATTTCCAAAGgttagagaga ... ttggtatcagGTTTTGAGCTTTGAAAAATGGTGAGAATCAGTGTG