Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtatttagttttgttttacttgatctagagaccatgaattattttttctaatgacaaaatgtgttctcttgatcgtttggattgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G59320.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828223|gb|CK117907.1|CK117907
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|86078651|gb|DR374408.1|DR374408
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         A
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcag-
EST: gi|47831865|gb|CK121549.1|CK121549
EST:     TGCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164223667|gb|ES014069.1|ES014069
EST:     TGCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTT
EST: gi|86082063|gb|DR377822.1|DR377822
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164143949|gb|ES066995.1|ES066995
EST:     GAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164128772|gb|ES164852.1|ES164852
EST:     TGCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAG
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAG
EST: gi|47829105|gb|CK118789.1|CK118789
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86027043|gb|DR322796.1|DR322796
EST:     TGCAGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCTTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47829246|gb|CK118930.1|CK118930
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47830038|gb|CK119722.1|CK119722
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86081945|gb|DR377704.1|DR377704
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164078097|gb|ES077758.1|ES077758
EST:     CGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: CGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86081626|gb|DR377383.1|DR377383
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47831263|gb|CK120947.1|CK120947
EST:     TGCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164215056|gb|ES059725.1|ES059725
EST:     ATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAG
genomic: ATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAG
EST: gi|86082027|gb|DR377786.1|DR377786
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164043994|gb|ES197273.1|ES197273
EST:     GAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47831181|gb|CK120865.1|CK120865
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47831382|gb|CK121066.1|CK121066
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|163974473|gb|EL986088.1|EL986088
EST:     GCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|163975858|gb|ES050614.1|ES050614
EST:     TTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|47828357|gb|CK118041.1|CK118041
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86076783|gb|DR372540.1|DR372540
EST:     TGCAGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCTTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164235988|gb|ES145033.1|ES145033
EST:     TGCGGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTA
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTA
EST: gi|164150609|gb|ES213736.1|ES213736
EST:     GTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164134041|gb|ES055685.1|ES055685
EST:     GTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86082240|gb|DR377999.1|DR377999
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164045543|gb|ES103998.1|ES103998
EST:     TGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: TGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|164134357|gb|EL998170.1|EL998170
EST:     GGTGTTAGCATTCCATATCCCATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAGTGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
genomic: GGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT
EST: gi|86081847|gb|DR377606.1|DR377606
EST:     TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA                         CATCAAGTGAAATGGAAGCTTACGTCGCCGTTTTGGCGTTAAGAGTATGGT
genomic: TGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAAgtaagtattt ... attgttgcagCATCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGT