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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAACGAGTCTGAGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttcatctctttttcggtttttgatttatgggttgttttcgttttttgggatctgtggtcttttgtgattgtctttgtttgctcgtttagcgttg...

Basic information

species Arabidopsis thaliana
transcript AT5G59160.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G59160.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
CTCAACGAGTCTGAGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttcatctctttttcggtttttgatttatgggttgttttcgttttttgggatctgtggtcttttgtgattgtctttgtttgc-tcgtttagcgttg------
|||  |||||| |||||||| ||||| |||| ||||||  | ||||| || ||  | || || |||||||| |||||||| || || |||||||||||||||   |  | |  ||   |   ||| |  | |  ||   |   | |   |    ||||||  ||||     |   | |    |  |  ||||    |  ||      
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccct--atttctcgtctccggccggccgtggcagt---agatctg--gtctgaccgggcggccagcttacgtatcgtgggactctggtgatc

upper sequence: AT5G59160.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv06s0004g05530.t01 (Vitis vinifera), 5'ss of exon 1
CTCAACGAGTCTGAGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttcatctctttttcggtttttgatttatgggttgttttcgttt--tttgggatctgtggtcttttgtgattgtctttgtttgctcgtttagcgttg
|| |  ||||| |||||||| ||||| || |  || || |||||||| |||||||| |||||||| ||||||||||| || || || || ||||||||||||   |||| | |    ||    |||||  ||    || |  ||  |||  ||| |  | |||| | ||| | | || |    ||||    | |    ||  
CTGATGGAGTCGGAGATCCGCCAGCTCTGTACTGTTTCCAGAGAGATCTTTCTTCAGCAGCCTAATCTTCTTGAGCTGGAGGCACCAATTAAGATCTGCGgtgcgtttccttttaactttttcttttgggttgaatgtggggttgatttggttttgtttttgtgatttttggagtttttgggggtttttaagatcttggt--

upper sequence: AT5G59160.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S22_185V6.1 (Physcomitrella patens), 5'ss of exon 2
CTCAACGAGTCTGAGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaattt-catctctttttcggtttttgatttatgggttgttttcgttttttg-ggatctgtggtcttttgtgattgtct--ttgtttgctcgtttagcgttg
||    ||| | || ||||||||||||||  |||  || |  || || ||| |    |||||||||||||||||||| || || || ||||||||||| ||||  | | ||  |||  ||   |     | |      | || || ||   | | || | ||     |  ||||| ||       |  ||  | |  | | |  
CTTTCGGAGGCCGAAATCCGTCAGCTTTGTGTCGCGTCAAAGGATATATTTTTGTCCCAGCCTAACCTTCTTGAGCTTGAGGCGCCAATCAAGATCTGTGgtatgtgtacaattctcatttcatacc--actatctcatagtattagtccctagtggttttggcaattcatgtgaatgcacggcagaatgagcttgaaccat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116441435|gb|EG484027.1|EG484027
EST:     TCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCG                         GTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAGTATGGAG
genomic: TCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttca ... tttttttcagGTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAGTATGGAG
EST: gi|125202795|gb|EL217749.1|EL217749
EST:     AGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCG                         GTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAG
genomic: AGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttca ... tttttttcagGTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAG
EST: gi|116441436|gb|EG484028.1|EG484028
EST:     TCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCG                         GTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAGTATGGAG
genomic: TCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttca ... tttttttcagGTGATATTCATGGACAATACTCAGATCTATTGAGGCTGTTTGAGTATGGAG