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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGTCGCCGGATCTTCTTGATTTCCGATTCACTTGGCTTTCCTCTTCTCTTCCTTTTAACACACGACGACGCTTCATAGTTTTTTGTTGTGATTCAGgtaaacaaatatcgaaaactagtttcctaaatttgttgattcagatcgatcttttaaccctcattatcgttttcaatagcttctatggattcgattttctgagtattgttgcttgattttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G58950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482313|gb|EG524905.1|EG524905
EST:     TCTTCCTTTTAACACACGACGACGCTTCATAGTTTTTTGTTGTGATTCAG                         GAAGAGGTATGTAATTCAGGATTTTCCGGTGATTTTGGTGGGAACGTTTGG
genomic: TCTTCCTTTTAACACACGACGACGCTTCATAGTTTTTTGTTGTGATTCAGgtaaacaaat ... gattttgtagGAAGAGGTATGTAATTCAGGATTTTCCGGTGATTTTGGTGGGAACGTTTGG
EST: gi|116482311|gb|EG524903.1|EG524903
EST:     TCTTCCTTTTAACACACGACGACGCTTCATAGTTTTTTGTTGTGATTCAG                         GAAGAGGTATGTAATTCAGGATTTTCCGGTGATTTTGGTGGGAACGTTTGG
genomic: TCTTCCTTTTAACACACGACGACGCTTCATAGTTTTTTGTTGTGATTCAGgtaaacaaat ... gattttgtagGAAGAGGTATGTAATTCAGGATTTTCCGGTGATTTTGGTGGGAACGTTTGG