1 5' 3' | 2 5' 3' | 3 5' 3' |
ACGAAGATGAAGACACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttactcgttccgttaatattctagtttccttgcctctggttaaagtgagtgttggattttcgatagaagatgagtgtcggatttttgatagaagatgtattcttctgggtttatgattttgtag
species | Arabidopsis thaliana |
transcript | AT5G58590.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCT GAAATCGAAGATGTATCGATTTGATAAAGAAGGGAACCAATGGAAGGAGAGEST: gi|116477948|gb|EG520540.1|EG520540
genomic: GAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttact ... gattttgtagGAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAG
EST: ACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATTT GAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGEST: gi|125258853|gb|EL272938.1|EL272938
genomic: ACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttact ... gattttgtagGAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAG
EST: GAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCT GAAATCGAAGATGTATCGATTCGATAAAGAAGGEST: gi|116472788|gb|EG515380.1|EG515380
genomic: GAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttact ... gattttgtagGAAATCGAAGATGTATCGATTCGATAAAGAAGG
EST: ACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCT GAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAG
genomic: ACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttact ... gattttgtagGAAATCGAAGATGTATCGATTCGATAAAGAAGGGAACCAATGGAAGGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAAGATGAAGACACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTTGCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTgtatgttactcgttccgttaatattctagtttccttgcctctggttaaagtgagtgttggattttcgatagaagatgagtgtcggatttttgatagaagatgtattcttctgggtttatgattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA