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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaagctcctaatcgtttcttctctcttaaataaatcaactttatctgatcttagatgcttttgtgaattgatgataaaagtag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468461|gb|EG511053.1|EG511053
EST:     ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAA-TAG                         CCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
genomic: ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaa ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
EST: gi|124764044|gb|EH854174.1|EH854174
EST:     CACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAA-TAG                         CCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
genomic: CACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaa ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
EST: gi|125317465|gb|EL331550.1|EL331550
EST:     ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAA-TAG                         CCAAGCTCCTGTTGCTGTGCAAGAA
genomic: ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaa ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAA
EST: gi|116468405|gb|EG510997.1|EG510997
EST:     ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAA-TAG                         CCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
genomic: ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaa ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
EST: gi|116454058|gb|EG496650.1|EG496650
EST:     ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTC--AA--AA                         CCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
genomic: ACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAGTAAgtctctttaa ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA