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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAgtaagtctctttaagctcctaatcgtttcttctctcttaaataaatcaactttatctgatcttagatgcttttgtgaattgatgataaaagtag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454058|gb|EG496650.1|EG496650
EST:     CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAA                         CCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
genomic: CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAAgtaagtctct ... ataaaagtagCCAAGCTCCTGTTGCTGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGA
EST: gi|116468405|gb|EG510997.1|EG510997
EST:     CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAATA                        
genomic: CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTC-AAA-Agtaagtctct ... ataaaagta
EST: gi|116468405|gb|EG510997.1|EG510997
EST:     CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAATA                        
genomic: CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTC-AAA-Agtaagtctct ... ataaaagta
EST: gi|116468461|gb|EG511053.1|EG511053
EST:     CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAATA                        
genomic: CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTC-AAA-Agtaagtctct ... ataaaagta
EST: gi|116468461|gb|EG511053.1|EG511053
EST:     CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAATA                        
genomic: CTCCACACAACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTC-AAA-Agtaagtctct ... ataaaagta